Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs7034776 | chr9:25718023 | C/T | 0 | 216 | 9.05 | 11.7 | 2.07 | KM Plot |
| BLCA | rs7040462 | chr9:18226279 | C/T | 0 | 216 | 8.43 | 16.03 | 2.07 | KM Plot |
| BLCA | rs7045559 | chr9:138399240 | G/T | 1.42E-8 | 216 | 4.6 | 7.77 | 9.47 | KM Plot |
| BLCA | rs7096420 | chr10:75058357 | C/T | 1.89E-10 | 216 | 1.05 | 9.43 | 10.1 | KM Plot |
| BLCA | rs71462337 | chr11:65027801 | A/G | 3.64E-5 | 211 | 9.78 | 8.2 | 0.5 | KM Plot |
| BLCA | rs7191283 | chr16:533465 | C/G | 1.74E-8 | 216 | 10.1 | 7.2 | 1.97 | KM Plot |
| BLCA | rs7197679 | chr16:11702081 | C/A | 1.34E-5 | 206 | 4.73 | 12.05 | 9.47 | KM Plot |
| BLCA | rs7205963 | chr16:523120 | C/T | 2.72E-8 | 211 | 10.1 | 6.68 | 2.12 | KM Plot |
| BLCA | rs7206743 | chr16:540221 | G/A | 3.84E-8 | 209 | 10.32 | 7.13 | 2.12 | KM Plot |
| BLCA | rs7214657 | chr17:43349920 | G/T | 0.000166 | 216 | 5.13 | 10.53 | 9.78 | KM Plot |
| BLCA | rs72449099 | chr7:100494922 | AAGC/A | 1.41E-5 | 216 | 11.07 | 9.47 | 3.98 | KM Plot |
| BLCA | rs72636666 | chr8:50708010 | C/T | 0 | 210 | 10.33 | 8.4 | 0.1 | KM Plot |
| BLCA | rs72636668 | chr8:50709306 | T/C | 0 | 210 | 10.33 | 8.4 | 0.1 | KM Plot |
| BLCA | rs72636670 | chr8:50710608 | T/C | 0 | 210 | 10.33 | 8.4 | 0.1 | KM Plot |
| BLCA | rs72636673 | chr8:50714425 | G/T | 0 | 210 | 10.13 | 8.43 | 0.1 | KM Plot |